Here's a Heaptrack - a heap memory profiler for Linux - success story: 10x memory peak reduction from 140GB to 14GB in the genotyping domain:

GitHub

High memory usage for joint-calling large cohort · Issue #15 · PacificBiosciences/sawfish

Hi, I'm trying to call SVs in a large-ish cohort (214 cattle samples with 3 Gb genome, median ~10x coverage). From #9, it seems like larger cohorts...

More on Heaptrack:

GitHub

GitHub - KDE/heaptrack: A heap memory profiler for Linux

A heap memory profiler for Linux. Contribute to KDE/heaptrack development by creating an account on GitHub.

#Linux #Profiling #MemoryReduction

GitHub

High memory usage for joint-calling large cohort · Issue #15 · PacificBiosciences/sawfish

Hi, I'm trying to call SVs in a large-ish cohort (214 cattle samples with 3 Gb genome, median ~10x coverage). From #9, it seems like larger cohorts...

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